Genetics (GEN)

GEN 604 - Principles of Genetics

Credits: 0 or 4

Chemical structure of genetic material, gene recombination, mutation, and chromosome mapping. Gene expression and regulation; recombinant DNA; evolutionary, quantitative, and population genetics. College math or statistics suggested.

Prerequisite(s): (( (BIOL 411 with a minimum grade of D- or BIOL 411H with a minimum grade of D- or BIOL 413 with a minimum grade of D-) and (BIOL 412 with a minimum grade of D- or BIOL 412H with a minimum grade of D- or BIOL 414 with a minimum grade of D-)) or BMS 507 with a minimum grade of D-) and CHEM 403 with a minimum grade of D- and (CHEM 404 with a minimum grade of D- or CHEM 404H with a minimum grade of D-).

Equivalent(s): BIOL 604

Grade Mode: Letter Grading

GEN 606 - Genetics Lab

Credits: 4

Hands-on experience with some of the important model organisms used for research in genetics (fruit flies, bacteria, yeast, nematodes, and plants). Investigation of fundamental genetic concepts in the laboratory, experience with transmission and molecular genetic techniques, introduction to bioinformatics, analysis and interpretation of data.

Prerequisite(s): GEN 604 with a minimum grade of D-.

Grade Mode: Letter Grading

Special Fee: Yes

GEN 704 - Microbial Genetics and Genomics

Credits: 5

Study of heritable information in bacteria, their viruses, and model Eukaryotic microbes and fundamentals of bacterial genomics. Topics will include genetics of bacteriophages and bacteria; genome maintenance, mutation and evolution especially in reference to evolution of pathogens; mechanisms of gene transfer, gene regulation and adaptive responses; analysis of gene expression including by using the latest genomic tools; use of genomic data, including concepts and strategies of genome sequencing and annotation as well as metagenomics approaches for understanding diversity. Practical laboratory training in microbial genetics and genomics. Special emphasis on recombinant DNA techniques, nucleotide sequencing methods, and bioinformatics analysis to dissect and analyze gene function and genome structural features as practical tools for careers in biotechnology. Original research projects will include opportunities to work with bacteria, phages, and yeast.

Attributes: Writing Intensive Course

Prerequisite(s): BMS 503 with a minimum grade of D- and BMS 504 with a minimum grade of D- and GEN 604 with a minimum grade of D-.

Grade Mode: Letter Grading

Special Fee: Yes

View Course Learning Outcomes

GEN 705 - Population Genetics

Credits: 3

Exploration of the forces (mutations, selection, random drift, inbreeding, assortative mating) affecting the frequency and distribution of genetic variation in natural populations. Quantifying the structure of populations. Methods of analysis for theoretical and practical applications.

Prerequisite(s): GEN 604 with a minimum grade of D- and BIOL 528 with a minimum grade of D-.

Equivalent(s): PBIO 705, ZOOL 665, ZOOL 705

Mutual Exclusion: No credit for students who have taken NR 664.

Grade Mode: Letter Grading

GEN 706 - Human Genetics

Credits: 4

Genetic basis of human traits and diseases including both traditional methods of diagnosis and contemporary molecular genetic approaches stemming from the human genome project. Case studies exemplify common practices in human genetic counseling and integrate the scientific basis of diagnosis with the special ethical implications of human genetic analysis.

Prerequisite(s): GEN 604 with a minimum grade of D-.

Equivalent(s): ANSC 706, BCHM 706

Grade Mode: Letter Grading

GEN 711 - Genomics and Bioinformatics

Credits: 0 or 4

Methods, applications, and implications of genomics--the analysis of whole genomes. Medical, ethical and legal implications of genomic data. Computer lab provides exposure and experience in a range of bioinformatics approaches used in genome analysis. Computer Lab.

Prerequisite(s): GEN 604 with a minimum grade of D-.

Equivalent(s): GEN 711W

Grade Mode: Letter Grading

GEN 711W - Genomics and Bioinformatics

Credits: 0 or 4

Methods, applications, and implications of genomics--the analysis of whole genomes. Microbial, plant and animal genomics are addressed, as well as medical, ethical and legal implications. The lab provides exposure and experience on a range of bioinformatics approaches--the computer applications used in genome analysis. Lab.

Attributes: Writing Intensive Course

Prerequisite(s): GEN 604 with a minimum grade of D-.

Equivalent(s): BCHM 711, BCHM 715, GEN 711, MICR 711, MICR 715

Grade Mode: Letter Grading

GEN 712 - Programming for Bioinformatics

Credits: 5

Development of programming skills that enable life science students to ask fundamental biological questions that require computers to automate repetitive tasks and handle query results efficiently. Topics include: computer values of important parameters of biological sequence data; pattern search and motif discovery scripts; accessing, querying, manipulating, retrieving, parsing, analyzing, and saving data from local and remote databases. Computer Lab.

Prerequisite(s): GEN 604 with a minimum grade of D- and GEN 711 with a minimum grade of D-.

Grade Mode: Letter Grading

GEN 713 - Microbial Ecology and Evolution

Credits: 4

Evolutionary and ecological forces that generate the tremendous diversity of microbial life on Earth with emphasis on viruses, archaea and bacteria. Functional roles of microorganisms, their population dynamics and interactions, and their mechanisms of evolutionary change in a variety of environmental settings, including natural communities and laboratory microcosms.

Attributes: Writing Intensive Course

Prerequisite(s): GEN 604 with a minimum grade of D- and BMS 503 with a minimum grade of D- and BMS 504 with a minimum grade of D-.

Equivalent(s): MICR 713

Grade Mode: Letter Grading

GEN 714 - Personal Genomics

Credits: 4

Analysis and implications of personal genomic data is the focus of this course. Students understand and appreciate all aspects of the availability of personal genomic information and tools including scientific, medical, social, ethical and legal issues. Students have the opportunity to analyze their own individual genome to one of the publicly available genomes to learn about all various aspects of this emerging field. The course will be an entirely online format.

Prerequisite(s): GEN 604 with a minimum grade of D-.

Grade Mode: Letter Grading

GEN 715 - Molecular Evolution

Credits: 4

Rates and patterns of evolutionary change in biomolecules. Forces affecting the size and structure of genomes. Molecular mechanisms of organismal evolution. Emphasizes integrating evidence from biochemistry, molecular genetics and organismal studies. Methods for reconstructing phylogeny from molecular sequences. Some knowledge of statistics recommended. Computer Lab.

Prerequisite(s): GEN 604 with a minimum grade of D-.

Equivalent(s): ZOOL 715

Grade Mode: Letter Grading

GEN 717 - Molecular Microbiology

Credits: 5

Fundamental physiological and metabolic processes of archaea, bacteria and fungi with a strong emphasis on prokaryotes. Literature-based course. Topics include regulation and coordination of microbial metabolism, bacterial cell cycle, global control of gene expression, signal transduction, and microbial cell differentiation. Lab.

Attributes: Writing Intensive Course

Prerequisite(s): BMS 503 with a minimum grade of D- and BMS 504 with a minimum grade of D- and GEN 604 with a minimum grade of D-.

Equivalent(s): MICR 717

Grade Mode: Letter Grading

Special Fee: Yes

GEN 721 - Comparative Genomics

Credits: 4

Explores the central questions and themes in contemporary comparative genomics, including genome biology, phylogenomics, human origins, population genomics, and ecological genomics. Provides the conceptual framework required to evaluate new work in this fast-changing field.

Prerequisite(s): GEN 604 with a minimum grade of D-.

Grade Mode: Letter Grading

GEN 725 - Population Genetics Lab

Credits: 2

Hands-on approach to exploration of evolutionary forces affecting the frequency and distribution of genetic variation in natural populations. Wet lab techniques include DNA extraction, restriction enzyme digestion, PCR, DNA fragment size-selection. Computational skills include high-throughput sequencing data control, identifying allelic variants, and generation of population genetic summary statistics.

Co-requisite: GEN 705

Prerequisite(s): GEN 604 with a minimum grade of D- and BIOL 528 with a minimum grade of D-.

Grade Mode: Letter Grading

GEN 771 - Molecular Genetics

Credits: 4

Structure, organization, replication, dynamics, and expression of genetic information in eukaryotes. Focus on molecular genetic and epigenetic mechanisms of gene expression and its control; molecular genetic control of cell division and differentiation during development.

Prerequisite(s): GEN 604 with a minimum grade of D-.

Grade Mode: Letter Grading

GEN 772 - Evolutionary Genetics of Plants

Credits: 4

Explores diverse aspects of plant genetic change in nature and under human influence. Emphasis will be placed on the unique aspects of plants, such as polyploidy and distinctive mating systems.

Attributes: Writing Intensive Course

Prerequisite(s): GEN 604 with a minimum grade of D-.

Equivalent(s): PBIO 772

Grade Mode: Letter Grading

GEN 790 - Undergraduate Teaching Experience

Credits: 1-4

Provide academic support to graduate teaching assistants or faculty in preparing, presenting, and executing Genetics lectures or labs.

Repeat Rule: May be repeated for a maximum of 4 credits.

Equivalent(s): MICR 790

Grade Mode: Letter Grading

GEN 795 - Investigations in Genetics

Credits: 1-4

Advanced research or scholarly projects developed and conducted under the supervision of a faculty member. Provides the opportunity to apply advanced knowledge and techniques of the major to a specific problem or question.

Repeat Rule: May be repeated for a maximum of 4 credits.

Equivalent(s): GEN 795W

Grade Mode: Letter Grading

GEN 795W - Investigations in Genetics

Credits: 1-4

Advanced research or scholarly projects developed and conducted under the supervision of a faculty member. Provides the opportunity to apply advanced knowledge and techniques of the major to a specific problem or question.

Attributes: Writing Intensive Course

Repeat Rule: May be repeated for a maximum of 4 credits.

Equivalent(s): GEN 795

Grade Mode: Letter Grading

GEN 799 - Senior Thesis

Credits: 1-4

Independent research project under the direction of a faculty sponsor for seniors in genetics. Final product is a written thesis. One or two semesters.

Attributes: Writing Intensive Course

Repeat Rule: May be repeated for a maximum of 8 credits.

Grade Mode: Letter Grading

GEN 799H - Honors Senior Thesis

Credits: 1-4

Independent research project under the direction of a faculty sponsor for seniors in genetics and in the Honors Program. Final product is a written thesis. One or two semesters.

Attributes: Honors course; Writing Intensive Course

Repeat Rule: May be repeated for a maximum of 8 credits.

Grade Mode: Letter Grading